|
How are the gene counts obtained for the mRNA expression datasets of DepMap 22Q2?
|
|
1
|
61
|
August 1, 2022
|
|
Predictability - direction of effect
|
|
1
|
43
|
July 25, 2022
|
|
Discrepancies in mutational status from Cell line Selector and DepMap mutations tab for cancer cell lines
|
|
6
|
82
|
June 24, 2022
|
|
Significance of a cluster of primary and metastatic cell line
|
|
4
|
91
|
May 10, 2022
|
|
RRBS Data access
|
|
2
|
60
|
April 27, 2022
|
|
Where can I find the raw genomics sequencing data?
|
|
0
|
291
|
April 25, 2022
|
|
RNA-seq Data Replicates
|
|
1
|
63
|
March 24, 2022
|
|
Can GISTIC 2.0 be run on CCLE_segment_cn.csv 2021Q4 directly?
|
|
2
|
145
|
February 15, 2022
|
|
What is relative copy number/copy number ratio?
|
|
13
|
4196
|
February 9, 2022
|
|
CCLE and GDSC expression data correlation low
|
|
1
|
131
|
February 4, 2022
|
|
Processing of Achilles gene effect dependency matrix for computation of common essential genes with CoRe R package
|
|
2
|
189
|
January 19, 2022
|
|
Identify conditionally essential genes in clinical subgroups of a specific cancer type
|
|
4
|
219
|
January 7, 2022
|
|
Accessing raw sequencing data
|
|
6
|
1587
|
December 16, 2021
|
|
Celligner missing genes
|
|
1
|
118
|
October 20, 2021
|
|
[IMPORTANT UPDATE] Fingerprinting data corrections (21Q3 release)
|
|
0
|
1233
|
August 11, 2021
|
|
KM12 RKO mutation on CBR3
|
|
1
|
142
|
July 26, 2021
|
|
Identify putative drugs and pertubagens that selectively sensitize specific cancer cell lines for translational cancer research
|
|
2
|
256
|
July 17, 2021
|
|
Mutation frequency
|
|
1
|
152
|
June 28, 2021
|
|
CCLE RNAseq raw counts for all ~1300 lines
|
|
1
|
284
|
June 16, 2021
|
|
Panel-of-normal data for variant calling
|
|
1
|
160
|
April 23, 2021
|
|
Which reference genome is used for aligning raw sequencing data?
|
|
3
|
295
|
April 20, 2021
|
|
Find "differentially" significant pertubagens that sensitize selectively different cancer cell lines
|
|
4
|
438
|
March 6, 2021
|
|
What is the Variant_annotation column and how is function of mutations annotated?
|
|
1
|
1494
|
July 27, 2020
|
|
Any plans for additional WGS data?
|
|
6
|
635
|
February 9, 2021
|
|
Common essential genes
|
|
3
|
1254
|
January 16, 2021
|
|
Proteomics data
|
|
4
|
319
|
January 13, 2021
|
|
Germline mutations
|
|
1
|
238
|
January 4, 2021
|
|
Proteomics Dataset unavailable
|
|
1
|
191
|
December 22, 2020
|
|
How to use the DepMap data to define negative genetic interactions?
|
|
1
|
271
|
December 8, 2020
|
|
Exon usage ratio
|
|
1
|
150
|
December 7, 2020
|
