omics

Topic Replies Views Activity
Processing of Achilles gene effect dependency matrix for computation of common essential genes with CoRe R package
Q&A
portal ,  genetic-screens ,  omics
2 16 January 19, 2022
Identify conditionally essential genes in clinical subgroups of a specific cancer type
Q&A
portal ,  genetic-screens ,  omics
4 54 January 7, 2022
Accessing raw sequencing data
Q&A
omics ,  data
6 889 December 16, 2021
Celligner missing genes
Q&A
omics
1 48 October 20, 2021
What is relative copy number/copy number ratio?
Q&A
omics ,  documentation
11 2347 August 11, 2021
[IMPORTANT UPDATE] Fingerprinting data corrections (21Q3 release)
Issues and Bugs
omics ,  data
0 522 August 11, 2021
KM12 RKO mutation on CBR3
Issues and Bugs
omics
1 73 July 26, 2021
Identify putative drugs and pertubagens that selectively sensitize specific cancer cell lines for translational cancer research
Q&A
compound-screens ,  genetic-screens ,  omics
2 160 July 17, 2021
Mutation frequency
Q&A
omics ,  documentation
1 86 June 28, 2021
CCLE RNAseq raw counts for all ~1300 lines
Q&A
omics ,  data
1 198 June 16, 2021
Panel-of-normal data for variant calling
Q&A
omics ,  data
1 90 April 23, 2021
Which reference genome is used for aligning raw sequencing data?
Q&A
genetic-screens ,  omics
3 223 April 20, 2021
Find "differentially" significant pertubagens that sensitize selectively different cancer cell lines
Q&A
compound-screens ,  genetic-screens ,  omics ,  data
4 338 March 6, 2021
What is the Variant_annotation column and how is function of mutations annotated?
Q&A
portal ,  omics
1 810 July 27, 2020
Any plans for additional WGS data?
Q&A
omics ,  data
6 468 February 9, 2021
Common essential genes
Q&A
portal ,  genetic-screens ,  omics ,  data ,  documentation
3 891 January 16, 2021
Proteomics data
Q&A
omics
4 241 January 13, 2021
Germline mutations
Q&A
omics ,  data
1 157 January 4, 2021
Proteomics Dataset unavailable
Current Issues
portal ,  omics ,  data
1 131 December 22, 2020
How to use the DepMap data to define negative genetic interactions?
Q&A
omics ,  data ,  documentation
1 177 December 8, 2020
Exon usage ratio
Q&A
omics
1 94 December 7, 2020
Inconsistent Annotation_Transcript in CCLE_mutations file across different versions
Issues and Bugs
omics ,  data
1 155 December 3, 2020
Genome coverage using WGS/WES
Q&A
omics
1 105 October 28, 2020
What are the criteria for COSMIC hotspot mutations?
Q&A
omics ,  data
1 183 October 14, 2020
Where can I find detailed documentation on your bioinformatic pipelines used for computing the copy number ratios, gene expression, and mutation calls?
Q&A
omics
0 214 August 13, 2020
CCLE gene level count data
Q&A
omics ,  data
4 248 August 14, 2020
Genome version Methylation data and other questions
Q&A
omics
1 146 July 30, 2020
DepMap Expression Public 20Q2
Q&A
omics
1 192 July 27, 2020
Bioinformatics pipelines
Q&A
omics
1 226 July 27, 2020
Why did some cell lines disappear from 20Q2 release?
Q&A
omics ,  data
1 202 June 18, 2020