omics

Topic Replies Views Activity
What is relative copy number/copy number ratio?
Q&A
omics ,  documentation
11 1586 August 11, 2021
[IMPORTANT UPDATE] Fingerprinting data corrections (21Q3 release)
Issues and Bugs
omics ,  data
0 296 August 11, 2021
KM12 RKO mutation on CBR3
Issues and Bugs
omics
1 47 July 26, 2021
Identify putative drugs and pertubagens that selectively sensitize specific cancer cell lines for translational cancer research
Q&A
compound-screens ,  genetic-screens ,  omics
2 96 July 17, 2021
Mutation frequency
Q&A
omics ,  documentation
1 53 June 28, 2021
CCLE RNAseq raw counts for all ~1300 lines
Q&A
omics ,  data
1 100 June 16, 2021
Panel-of-normal data for variant calling
Q&A
omics ,  data
1 64 April 23, 2021
Which reference genome is used for aligning raw sequencing data?
Q&A
genetic-screens ,  omics
3 193 April 20, 2021
Find "differentially" significant pertubagens that sensitize selectively different cancer cell lines
Q&A
compound-screens ,  genetic-screens ,  omics ,  data
4 262 March 6, 2021
What is the Variant_annotation column and how is function of mutations annotated?
Q&A
portal ,  omics
1 531 July 27, 2020
Any plans for additional WGS data?
Q&A
omics ,  data
6 362 February 9, 2021
Common essential genes
Q&A
portal ,  genetic-screens ,  omics ,  data ,  documentation
3 669 January 16, 2021
Proteomics data
Q&A
omics
4 189 January 13, 2021
Germline mutations
Q&A
omics ,  data
1 112 January 4, 2021
Proteomics Dataset unavailable
Current Issues
portal ,  omics ,  data
1 93 December 22, 2020
How to use the DepMap data to define negative genetic interactions?
Q&A
omics ,  data ,  documentation
1 149 December 8, 2020
Exon usage ratio
Q&A
omics
1 64 December 7, 2020
Inconsistent Annotation_Transcript in CCLE_mutations file across different versions
Issues and Bugs
omics ,  data
1 94 December 3, 2020
Genome coverage using WGS/WES
Q&A
omics
1 83 October 28, 2020
What are the criteria for COSMIC hotspot mutations?
Q&A
omics ,  data
1 129 October 14, 2020
Where can I find detailed documentation on your bioinformatic pipelines used for computing the copy number ratios, gene expression, and mutation calls?
Q&A
omics
0 173 August 13, 2020
CCLE gene level count data
Q&A
omics ,  data
4 174 August 14, 2020
Genome version Methylation data and other questions
Q&A
omics
1 119 July 30, 2020
DepMap Expression Public 20Q2
Q&A
omics
1 156 July 27, 2020
Bioinformatics pipelines
Q&A
omics
1 192 July 27, 2020
Accessing raw sequencing data
Q&A
omics ,  data
1 546 June 18, 2020
Why did some cell lines disappear from 20Q2 release?
Q&A
omics ,  data
1 180 June 18, 2020