Accessing raw sequencing data

Users have asked us if they can access raw sequencing data (bam/fastq files) of our cell lines.

A subset of our raw sequencing data is available online as part of this CCLE publication. The data can be accessed under the accession number PRJNA523380 on the SRA website. Furthermore most of these bam files are available on GDC legacy portal. You should be able to download those and then reconvert to fastq if this is what you are looking for.

For the remaining cell lines, at the moment we are not able to share raw sequencing data due to regulations related to patient privacy and MTAs. We are currently working on establishing a protocol for sharing such data, and hope to have data available in appropriate repositories in the near future.