Model level data for other omics (RPPA, Mass Spec and Methylation data)

Q&A
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1

Hello,

Thanks a lot for this great resource. Currently the OmicsProfiles file only lists rna,wgs and wes data. How do I know which condition was used for other omics?

thanks in advance!

2

The datasets such as RPPA, Mass Spec and Methylation were all generated by independent labs and each have a separate publication describing each of those resources. If you look in the download section of the portal, and find the downloadable files for each, you can click “View full release details” to see a citation from the release the dataset originally came from.

We have not registered “ModelConditions” for the the data from those assays, so I don’t have a machine readable file that I can point you to for those.

In the portal, we only track the results from those assays at the level of “Model” without going into the details of the specific condition. The original papers are going to be the best source of more detailed information.

Thanks,

Phil