The number of cell lines is inconsistent

We used "two class comparison " to analyze two sets of cell lines. We uploaded 30 cell lines in set A. However, only 7 cell lines was included in set A to calculate CERES score based on CRISPR Avana 21Q1. The number of uploaded cells is inconsistent with the actual number of analyzed cells. I do not know why this happens.

It only considers the intersection in the sets of lines. Is it possible that 23 of your lines are not represented in the CRISPR Avana 21Q1 dataset?

You could view your cell line set in the Cell line selector tool and tell it to add a random gene’s Avana score as a column. Then you can see which lines have values and which are missing data. Any lines which are missing data are probably not present in that dataset.