OmicsCNGene method for cell lines

Q&A
1

I downloaded the OmicsCNGene.csv from the DepMap portal. In the info screen it states that:

Inferred from WGS, WES or SNP array depending on the availability of the data type.

Is there a meta file from which I can match the cell lines with the data type?

Thanks!

2

Hi,

There are two relevant metadata tables: OmicsDefaultModelProfiles.csv contains information on which ProfileIDs are chosen to represent each model, and OmicsProfiles.csv contains information on the specific sequencing method for each ProfileID.

Best,
Simone