Getting list of dependent cell lines based on RNAi

Q&A
1

I have been trying to get the list of dependent cell lines based on RNAi experiments for multiple genes. As per the description given, cell lines having the probability of dependency > 0.5 are considered dependent. How do I find which cell lines from the RNAi experiment have a probability of dependency > 0.5? Since I’m searching for this information within multiple genes, I was wondering which data file can be used to get it?

Thank you

2

Hello,

The RNAi probabilities are in the file “gene_dependency.csv” in the DEMETER2 combined figshare: DEMETER 2 Combined RNAi

3

Thank you for your reply and directing me to appropriate file.