I am trying to run the DepMap Omics RNA pipeline on my own data. The pipeline is available here but the genome reference files in the ‘ccleparams’ bucket are not accessible; specifically I’m getting a 403 Forbidden error which I presume means that access to the ‘ccleparams’ bucket is not public (I am using a billing account that is able to download from the ‘cclebams’ bucket).
Is it possible for the genome reference files to be made available? The files I require are:
gs://ccleparams/rna/gencode.v38_with_viral_corrected.gtf
gs://ccleparams/STAR_index_hg38_with_viral.tar.gz
gs://ccleparams/rna/Homo_sapiens_assembly38_with_viral.fa
As a sidenote, I’ve tried to access the reference files for other pipelines mentioned in other posts here but it appears these are non-accessible as well. e.g. Reference WGS data of the cell line fusion gene .
