Quantifying Exon Counts

I am working to identify alternative splicing events in human and mouse breast cancer cell lines. I have been using your exon usage ratio dataset recently (CCLE_RNAseq_ExonUsageRatio_20180929) and was wondering where I could find the source code for this (supposedly available upon request) so that we can expand our analysis to the cell line derivatives and mouse cell lines. I will certainly cite the source in any works using your code.

Or, more broadly, I was wondering if anyone knew of algorithms that did individual exon quantification? Any guidance is appreciated.

Thank you so much!

Hi, sorry for the late reply. Unfortunately we do not have access to the source code for this file. I’d suggest contacting the author of the CCLE paper for access to the specific source code.