Is there any possibility to obtain exon usage ration for the data released in 2020 (i.e. a file like CCLE_RNAseq_ExonUsageRatio_20180929.gct but for the most recent release)?
We do not generate this data at the moment. We have been discussing about adding such a dataset to the portal, but the timeline of it is unclear at the moment.
It will be a valuable addition.
One thing to consider is perhaps using the same pipeline used for GTEx data - so the data will be comparable, it’ll often be super nice to have normal tissue RNAseq for comparison. Alternatively. I guess releasing the original junction count data would be nice, which allows people to apply the same calculation for other data if needed.
