Hi, I want to use RNAseq for data analysis. I saw there are two types of CCLE_RNAseq, one is labeled with “genes”, the other is labeled with “transcript”. Could I ask what is difference?
Thank you,
Hi, the one labeled as ‘transcript’ quantifies the transcripts. So if a gene has multiple isoforms, each isoform is individually reported. The one labeled ‘gene’ is the collapsed version of the transcripts for the same gene. So it is counting all the isoforms of the same gene.
Thank you. I get it!