Panel-of-normal data for variant calling

Q&A
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1

Hello DepMap team,

I am interested in processing one of our own in-house WGS data of a cell line similar to DepMap for better comparison. I read in Ghandi et al (2019) that a panel-of-normal (PoN) was created using ~8,000 TCGA normals to filter out artifacts and germline variants in Mutect. Would it be possible to share the .vcf file of PoN that was generated or to share which ~8,000 normals were used so I can attempt to recreate this particular file?

Thank you,
Yuka

2

Already got my answer thanks!