Dear DepMap community,
Thank you for your sharing the public datasets for genetic information.
I have a simple question about the mutation information.
I would like to use maftools to visualize the somatic mutation data. I downloaded the file named “OmicsSomaticMutations.csv”. But the read.maf function could not read the data, because the column names of the data are different from the requirements of maftools package. Additionally, even though I could change the column names by myself, I still could not find the information about “End_position”.
Therefore, I would like to ask if there is any possibility of analyzing the data according to the workflow of TCGA in the next version so that we will be able to use the same r package to visualize these data.