Hi,
We developped a chip panel of about 200 SNPs to authenticate the cell lines. We want to use the SNP information in the DepMap project as reference. But unfortunately, these 200 SNPs are all germline ones, and was filtered out in the mutation dataset of DepMap portal.
So, if the list of these 200 SNPs provided, can we get the mutation and read depth informaton on these ~200 sites for each cell line? Anyone of WES, RNAseq or WGS data is OK.
