Is it possible to check which CRISPR sgRNA library was used to screen each cell line

Q&A
1

I am trying to determine which library (e.g. Avana, KY or Humagne) is used for a particular cell line. Is this data available?

2

Hi idmehta,

You can use the ScreenSequenceMap for this.

3

Thanks - I was interested in looking at the lines which have been screened with the Humagne (Cas12) library. However, in ScreenSequenceMap, I can only identify screens that have used the Avana or KY libraries.

4

Make sure you’re looking at 23Q4, and try checking the unique entries in the Library column. You should see Humagne-CD.