GISTIC2 Analysis of cBioPortal Segment-Level CN Data

Q&A
1

Hello,
I’ve been interested in running GISTIC2 on the segment-level copy number data available via cBioPortal.
I assume this analysis may have been performed internally, and perhaps the results have even been deposited somewhere by your team. I was wondering if I’m missing a file or if there’s a way to access them?

Thank you,
Sharon

2

Hi Sharon,

Unfortunately, we do not perform GITSTIC internally, so we don’t have any results to share. You might have to perform the analysis on your own.

Thanks,

Simone