Genome Assembly used for CCLE SNP in 22q2 Segment file

Q&A
1

Hello dear DepMap development team,

I was wondering if similar to the WES and WGS sequencing, the copy number data in the 22q2 CCLE_segment_cn.csv file is indeed aligned for hg38 build as the WES CCLE data is. I could not find it mentioned explicitly.

Thanks,
Gil.

2

Hello Gil,

You are right, segment data in 22q2 CCLE_segment_cn.csv is aligned to the hg38 build. Thanks for pointing this out - we will make sure to add this information to the file description in future releases.

Best,
Simone