Dear DepMap developers,
Thanks for developing this amazing tool!
I have some questions regarding the data structure, especially for the PRISM drug AUC data.
- I noticed that some drugs have multiple BROAD IDs, I guess that’s from different batches. But which one should we use? And I also noticed that almost all these drugs will have a large number of datasets and a smaller number of datasets, why’s that? Please see the snapshots as an example.
Also, if I download the data and use it on my end, I can replicate the scatterplot of the larger number of data set, but cannot replicate the small one, and the reason is that I found more corresponding cell lines than the plot in the portal, which I am not sure why’s that.
- I also noticed there are multiple screen ids even for the same drug Board ID, I am also confused to use which one is correct.
Any help or suggestions would be appreciated!