Dear DepMap staff,
I am looking at the prism data and have few questions:
- there are 10 cell lines that failed the str profiling. Some are contaminated and other were misidentified. Should I dismiss these 10 cell lines?
- there are unique 4518 drugs however there are 4686 drug-batch combinations. Some drug have different dosages however some have different combinations with the same dosage. For instance “amoxicillin” have 2 batch: BRD-K55044200-001-14-6::2.5::HTS and BRD-K55044200-001-15-3::2.5::HTS. The correlation between the 2 batches is 0.00727. Could please clarify this batch notion and why they are not correlated. if interested in data for the unique 4518 drugs, can I the average of drugs with different batches? Please advise.
Thank you for your help.