Find cell line id of raw fastq files

Q&A
1

I am looking at the fastq files available here http://www.ncbi.nlm.nih.gov/sra?term=PRJNA523380

How can I associate each file with a cell line id? (in order to associate with Achilles cell line ids).

1 Like
2

Hi, Sorry for the very long delay. In case this is still relevant, you can use the cell line names and match them to what we have on the sample info file on the download page of the DepMap portal.