Reproducing ScreenGeneEffectUncorrected and CRISPRGeneEffectUncorrected from 25Q3

Greeting,

I am trying to reproduce the scores listed in ScreenGeneEffectUncorrected.csv and CRISPRGeneEffectUncorrected.csv from the RawReadcounts.

I have ran `chronos` with 1201 epoches, but my results tend to be slightly different.

I have come to the conclusion that it might be because I might be missing a step or two in the pre-processing of the readcounts before running chronos.

It is possible that my implementation of the Achilles pipeline might be flawed.

Do you by any chance have an implementation of such pipeline that you can share?

Thanks