How can I access/download large depmap datafiles without losing information?

Q&A
1

Hi all! I was able to download and use the depmap library on R using BioConductor. Im trying to access the OmicsExpressionGenesExpectedCountProfile.csv, but the functions I tried to use don’t work. I also tried downloading the csv onto my laptop, but it lost a lot of the information. Ultimately, trying to perform gene expression differential analysis. Does anyone know how to go about this?

2

Hi,

Thanks for reaching out. Could you provide more details on what information was lost? When you downloaded it locally, how were you reading in the file?

Best,
Simone

3

I’ll also interject that the DepMap R package is maintained by Laurent Gatto and Theo Killian of UCLouvain in Belgium, and is not affiliated with the DepMap project. However, Laurent Gatto added a post here for how to report issues with the page:

Thanks,
Phil