There are some genes in the AVANA library employed for the DepMap screens that have been excluded from DepMap reporting for simplicity. Is there a way to access the unprocessed data to look at the effect scores for these genes?
I’m not sure what you mean by “that have been excluded from DepMap reporting for simplicity.”
Are you referring to the genes that have been excluded due their guides being suspected of having off target cutting?
Regardless, you certainly can look at the the unprocessed data by downloading Achilles_logfold_change.csv from the latest download release. These are the log fold changes observed before the data is processed by Chronos.
Thanks,
Phil
