Isoform expression data

Q&A
1

Hi, we are looking at the transcript level data file available in Downloads section:

OmicsExpressionTranscriptsExpectedCountProfile.csv

What is the scale of these data? Are these cross sample (in this case cell lines) normalised? OR within sample normalised?

Thank you,
SH

2

Hi,

Thanks for reaching out. The expected counts are direct outputs from RSEM’s EM algorithm and are not normalized.

Thanks,
Simone