Hello,
I was wondering if there is a way to bulk download all of the data files from the 25Q2 release? I used to be able to do this on figshare. I saw in another question that you aren’t planning on putting this release on FigShare, however. It looks like you can only download multiple datafiles in the “Custom Downloads” tab if you select a list of cell lines or genes to filter by. However, it would be really convenient to be able to download all of the files at once without having to filter by cell lines or gene.
Thanks!
Shayna
What I recommend for bulk downloads is fetching https://depmap.org/portal/api/download/files which returned a CSV containing a list of all files in the portal, along with a URL which can be used to retrieve each file. You can subset that table to get the files from the release you’re interested in.
(Note, some files are retrieved via “signed urls” which eventually expire. I wouldn’t recommend saving that CSV for long periods of time, but instead retreive a new version of the CSV file right when you want to download files)
Thanks,
Phil
