# Where to find RNAseq data

**URL:** <https://forum.depmap.org/t/where-to-find-rnaseq-data/250>\
**Category:** Q&A\
**Tags:** data\
**Created:** [October 16, 2020, 11:40am UTC](https://forum.depmap.org/t/where-to-find-rnaseq-data/250 "2020-10-16T11:40:51Z")\
**Posts on this page:** 6\
**Page:** 1

<div class="post-metadata">

**Author:** ![kaldis](https://avatars.discourse-cdn.com/v4/letter/k/aca169/32.png) [@kaldis](https://forum.depmap.org/u/kaldis)\
**Post date:** [October 16, 2020, 11:40am UTC](https://forum.depmap.org/t/where-to-find-rnaseq-data/250/1 "2020-10-16T11:40:51Z")

</div>

I was wondering if there is RNAseq data available for the CRISPR KO cell lines?  
If yes, where can I find that data?

Thank you!

---

<div class="post-metadata">

**Author:** ![pmontgom](https://yyz1.discourse-cdn.com/flex035/user_avatar/forum.depmap.org/pmontgom/32/4_2.png) [@pmontgom](https://forum.depmap.org/u/pmontgom)\
**Post date:** [October 16, 2020, 1:09pm UTC](https://forum.depmap.org/t/where-to-find-rnaseq-data/250/2 "2020-10-16T13:09:22Z")

</div>

Are you asking where to find the expression data for cell lines after they’ve had a gene knocked out? If so, no, we don’t have that data, we only collect the expression of the pre-perturbed line.

However, you can find the pre-perturbed line’s expression data in the portal or download it from [https://depmap.org/portal/download/](https://depmap.org/portal/download/)

Thanks,  
Phil

---

<div class="post-metadata">

**Author:** ![kaldis](https://avatars.discourse-cdn.com/v4/letter/k/aca169/32.png) [@kaldis](https://forum.depmap.org/u/kaldis)\
**Post date:** [October 19, 2020, 9:03am UTC](https://forum.depmap.org/t/where-to-find-rnaseq-data/250/3 "2020-10-19T09:03:10Z")

</div>

Thank you Phil,

yes this was what I was looking for

---

<div class="post-metadata">

**Author:** ![coaxecva](https://avatars.discourse-cdn.com/v4/letter/c/cc9497/32.png) [@coaxecva](https://forum.depmap.org/u/coaxecva)\
**Post date:** [August 9, 2021, 6:05am UTC](https://forum.depmap.org/t/where-to-find-rnaseq-data/250/4 "2021-08-09T06:05:04Z")

</div>

Hi Phil,

I wonder if there are RNA-Seq fastq/bam files available for downloading for all the cell lines?

Thanks.

---

<div class="post-metadata">

**Author:** ![pmontgom](https://yyz1.discourse-cdn.com/flex035/user_avatar/forum.depmap.org/pmontgom/32/4_2.png) [@pmontgom](https://forum.depmap.org/u/pmontgom)\
**Post date:** [September 30, 2021, 3:34pm UTC](https://forum.depmap.org/t/where-to-find-rnaseq-data/250/5 "2021-09-30T15:34:09Z")

</div>

I believe the raw RNA sequencing data has the same issues as the DNA sequencing data which has slowed it’s release.

The original CCLE collection did have their BAM files released, however, for new lines (about 400) we are still figuring out a path to release these BAM files in a manner that complies with patient privacy and MTAs.

For information about the CCLE released sequencing data, see this post: [Accessing raw sequencing data](https://forum.depmap.org/t/accessing-raw-sequencing-data/32)

Thanks,  
Phil

---

<div class="post-metadata">

**Author:** ![Kim\_Paraiso](https://yyz1.discourse-cdn.com/flex035/user_avatar/forum.depmap.org/kim_paraiso/32/205_2.png) [@Kim\_Paraiso](https://forum.depmap.org/u/Kim_Paraiso)\
**Post date:** [July 13, 2022, 10:52pm UTC](https://forum.depmap.org/t/where-to-find-rnaseq-data/250/6 "2022-07-13T22:52:20Z")

</div>

Hello, I was wondering if there have been any new releases to include more cell lines? Specifically for eye?