# Where can I find detailed documentation on your bioinformatic pipelines used for computing the copy number ratios, gene expression, and mutation calls?

**URL:** <https://forum.depmap.org/t/where-can-i-find-detailed-documentation-on-your-bioinformatic-pipelines-used-for-computing-the-copy-number-ratios-gene-expression-and-mutation-calls/169>\
**Category:** Q&A\
**Tags:** omics\
**Created:** [August 13, 2020, 9:36pm UTC](https://forum.depmap.org/t/where-can-i-find-detailed-documentation-on-your-bioinformatic-pipelines-used-for-computing-the-copy-number-ratios-gene-expression-and-mutation-calls/169 "2020-08-13T21:36:43Z")\
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**Author:** ![Andrew\_Tang](https://yyz1.discourse-cdn.com/flex035/user_avatar/forum.depmap.org/andrew_tang/32/30_2.png) [@Andrew\_Tang](https://forum.depmap.org/u/Andrew_Tang)\
**Post date:** [August 13, 2020, 9:36pm UTC](https://forum.depmap.org/t/where-can-i-find-detailed-documentation-on-your-bioinformatic-pipelines-used-for-computing-the-copy-number-ratios-gene-expression-and-mutation-calls/169/1 "2020-08-13T21:36:44Z")

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You can find more details on the methods, including pipelines, in Supplementary Information section of the CCLE papers. Older files are described in the original [CCLE manuscript](https://www.nature.com/articles/nature11003) and newer files are described in the [new CCLE manuscript](https://www.nature.com/articles/s41586-019-1186-3). Additional information can also be found in the README.txt file for each [DepMap Release](https://depmap.org/portal/download/all/).