# Proteomics data

**URL:** <https://forum.depmap.org/t/proteomics-data/261>\
**Category:** Q&A\
**Tags:** omics\
**Created:** [October 22, 2020, 7:04am UTC](https://forum.depmap.org/t/proteomics-data/261 "2020-10-22T07:04:27Z")\
**Posts on this page:** 5\
**Page:** 1

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**Author:** ![pekert](https://avatars.discourse-cdn.com/v4/letter/p/c5a1d2/32.png) [@pekert](https://forum.depmap.org/u/pekert)\
**Post date:** [October 22, 2020, 7:04am UTC](https://forum.depmap.org/t/proteomics-data/261/1 "2020-10-22T07:04:27Z")

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Is the proteomics data recently published for the CCLE lines now available through DepMaP

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**Author:** ![pmontgom](https://yyz1.discourse-cdn.com/flex035/user_avatar/forum.depmap.org/pmontgom/32/4_2.png) [@pmontgom](https://forum.depmap.org/u/pmontgom)\
**Post date:** [October 22, 2020, 3:48pm UTC](https://forum.depmap.org/t/proteomics-data/261/2 "2020-10-22T15:48:23Z")

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You can download slices of the data through the portal’s tools, such as Data Explorer.

However, to get the full set, we direct users to download the data from [https://gygi.med.harvard.edu/publications/ccle](https://gygi.med.harvard.edu/publications/ccle)

Coincidentally, we _are_ planning on posting a reformatted version of this dataset in our download section in the 20Q4 update of the portal. (This update is targeted around the beginning of November, so not too far off) The reformatted version we’ll be providing is a matrix of values with DepMap IDs for the cell lines and the format is more consistent with the other files you that you will find in our DepMap quarterly releases.

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**Author:** ![rkarnik](https://yyz1.discourse-cdn.com/flex035/user_avatar/forum.depmap.org/rkarnik/32/302_2.png) [@rkarnik](https://forum.depmap.org/u/rkarnik)\
**Post date:** [December 15, 2020, 4:15pm UTC](https://forum.depmap.org/t/proteomics-data/261/3 "2020-12-15T16:15:37Z")

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@pmontgom: The downloadable proteomics data has been removed from the Gygi lab site, and I don’t see the new reformatted file in the Downloads section of Depmap. How do we get access to it? Thanks!

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**Author:** ![Bonell](https://avatars.discourse-cdn.com/v4/letter/b/e8c25b/32.png) [@Bonell](https://forum.depmap.org/u/Bonell)\
**Post date:** [December 15, 2020, 6:51pm UTC](https://forum.depmap.org/t/proteomics-data/261/4 "2020-12-15T18:51:24Z")

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I have the same Issue. I can’t see it available.

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**Author:** ![pmontgom](https://yyz1.discourse-cdn.com/flex035/user_avatar/forum.depmap.org/pmontgom/32/4_2.png) [@pmontgom](https://forum.depmap.org/u/pmontgom)\
**Post date:** [January 13, 2021, 4:35pm UTC](https://forum.depmap.org/t/proteomics-data/261/5 "2021-01-13T16:35:49Z")

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I see this still listed in our development queue. I’ll see if I can bump it in priority to get added to the downloads section.