Hello,
I am looking for a way to classify the cell lines in 3 categories (homozygously deleted/heterozygously deleted/WT, for my gene of interest) using the OmicsCNGene file and I found this conversation instructive. However, I am not sure to follow which threshold are you suggesting when using the OmicsCNGene file and not the segment profile file ? Did you update these threshold since this conversation happened and I missed it on the forum ? (and in this case I apologise)
Thanks a lot in advance for your feedback !
