# Dataset for abundance of transcripts?

**URL:** <https://forum.depmap.org/t/dataset-for-abundance-of-transcripts/3206>\
**Category:** Q&A\
**Tags:** omics, data\
**Created:** [April 18, 2024, 1:01pm UTC](https://forum.depmap.org/t/dataset-for-abundance-of-transcripts/3206 "2024-04-18T13:01:14Z")\
**Posts on this page:** 2\
**Page:** 1

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**Author:** ![abdalla-diaai](https://avatars.discourse-cdn.com/v4/letter/a/848f3c/32.png) [@abdalla-diaai](https://forum.depmap.org/u/abdalla-diaai)\
**Post date:** [April 18, 2024, 1:01pm UTC](https://forum.depmap.org/t/dataset-for-abundance-of-transcripts/3206/1 "2024-04-18T13:01:14Z")

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I am looking for a dataset to know abundance of different gene transcripts. I searched through the datasets available on depmap and found this? Is this the right dataset to use to answer this question?

### OmicsExpressionTranscriptsTPMLogp1Profile.csv

Pipeline: Expression

RNAseq transcript tpm data using RSEM. Log2 transformed, using a pseudo-count of 1.

- Rows: Omics Profile IDs
- Columns: transcripts (HGNC symbol and ensembl transcript ID)

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**Author:** ![simz](https://yyz1.discourse-cdn.com/flex035/user_avatar/forum.depmap.org/simz/32/440_2.png) [@simz](https://forum.depmap.org/u/simz)\
**Post date:** [April 18, 2024, 1:03pm UTC](https://forum.depmap.org/t/dataset-for-abundance-of-transcripts/3206/2 "2024-04-18T13:03:05Z")

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Hi,

Yes. I’d also note that all files with the suffix “Profile.csv” are indexed by ProfileIDs and you will need OmicsProfiles.csv to map them to ModelIDs if needed.

Thanks,  
Simone