# CCLE\_RNAseq\_count data for Deseq2?

**URL:** <https://forum.depmap.org/t/ccle-rnaseq-count-data-for-deseq2/1657>\
**Category:** Q&A\
**Created:** [August 22, 2022, 9:13am UTC](https://forum.depmap.org/t/ccle-rnaseq-count-data-for-deseq2/1657 "2022-08-22T09:13:49Z")\
**Posts on this page:** 1\
**Page:** 1

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**Author:** ![Chess](https://avatars.discourse-cdn.com/v4/letter/c/c6cbf5/32.png) [@Chess](https://forum.depmap.org/u/Chess)\
**Post date:** [August 22, 2022, 9:13am UTC](https://forum.depmap.org/t/ccle-rnaseq-count-data-for-deseq2/1657/1 "2022-08-22T09:13:49Z")

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I believe the CCLE\_RNAseq\_count data is appropriate gene-level data for Deseq2 analysis. Is this correct?

The CCLE\_RNAseq\_transcript data in TPM is not good for Deseq, as I understand it.

Thanks