# CCLE gene level count data
**URL:** https://forum.depmap.org/t/ccle-gene-level-count-data/160
**Category:** Q&A
**Tags:** data, omics
**Created:** [August 12, 2020, 3:24pm UTC](https://forum.depmap.org/t/ccle-gene-level-count-data/160 "2020-08-12T15:24:00Z")
**Posts on this page:** 5
**Page:** 1
### Author:  [@zhaoy](https://forum.depmap.org/u/zhaoy)
#### Post date: [August 12, 2020, 3:24pm UTC](https://forum.depmap.org/t/ccle-gene-level-count-data/160/1 "2020-08-12T15:24:01Z")
Where can we download the CCLE gene level count data (instead of TPM data currently provided by DepMap) with protein coding genes only?
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### Author:  [@jnoorbak](https://forum.depmap.org/u/jnoorbak)
#### Post date: [August 12, 2020, 10:51pm UTC](https://forum.depmap.org/t/ccle-gene-level-count-data/160/2 "2020-08-12T22:51:04Z")
The gene level counts are in ` CCLE_RNAseq_reads_v2.csv` and can be downloaded [here](https://depmap.org/portal/download/). We don’t have a version with only protein coding genes. But you should be able to subset the genes accordingly.
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### Author:  [@zhaoy](https://forum.depmap.org/u/zhaoy)
#### Post date: [August 13, 2020, 1:47pm UTC](https://forum.depmap.org/t/ccle-gene-level-count-data/160/3 "2020-08-13T13:47:47Z")
Thanks for your reply. From the file description for the CCLE\_RNAseq\_read\_v2\_csv:
“RNAseq TPM gene expression data for just protein coding genes using RSEM. Log2 transformed, using a pseudo-count of 1”
It seems this file contains TPM data, not the count data.
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### Author:  [@jnoorbak](https://forum.depmap.org/u/jnoorbak)
#### Post date: [August 14, 2020, 12:58pm UTC](https://forum.depmap.org/t/ccle-gene-level-count-data/160/4 "2020-08-14T12:58:37Z")
I see the description you mentioned for `CCLE_expression_full_v2.csv`. For `CCLE_RNAseq_read_v2_csv` I see the following: “RNAseq read count data from RSEM”
Could you point me to where you see that description?
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### Author:  [@zhaoy](https://forum.depmap.org/u/zhaoy)
#### Post date: [August 14, 2020, 1:53pm UTC](https://forum.depmap.org/t/ccle-gene-level-count-data/160/5 "2020-08-14T13:53:07Z")
Sorry I clicked the data on the “Top Downloads” page therefore the description is for CCLE\_expression\_full\_v2.csv. The description is right for CCLE\_RNAseq\_read\_v2\_csv file.